Artificial Intelligence in Soil Microbial Ecology and Bioremediation of Contaminated Soils
Keywords:
Artificial Intelligence, soil, environmental sustainabilityAbstract
Soil is the habitat for a thriving and intricate network of microorganisms, which play key roles in the cycling of nutrients, maintaining fertility, and supporting life in the environment. Over the past few decades, the issue of soil contamination as a result of human activities, industrial processes, agricultural chemicals, and improper waste disposal has developed into a major global problem. Many of the indigenous microflora in the soil are capable of degrading, transforming, or immobilizing many pollutants; therefore, microbially mediated bioremediation is environmentally sound and economically feasible. The complexity and dynamic nature of soil ecosystems contribute significantly to the difficulties in understanding and controlling microbial processes. Artificial Intelligence (AI) has come out as a panacea to the above issues since it can harness the ability to analyze huge and intricate datasets that arise from studies on soil microbes. Machine learning, data mining, and predictive modeling will assist in the identification of microbial patterns as well as forecasting pathways for degrading contaminants and optimizing bioremediation strategies. In combination with soil microbial ecology, Artificial Intelligence will lead to a better understanding of microbial interaction thus improving the decision-making process and ultimately the effectiveness of bioremediation programs. This approach is an interdisciplinary one and can be taken as a positive step toward the sustainable management and restoration of contaminated soils.
References
F. Alavian and F. Khodabakhshi, “Integrating artificial intelligence with microbial biotechnology for sustainable environmental remediation,” Environmental Monitoring and Assessment, vol. 197, no. 11, Art. no. 1183, 2025, doi: 10.1007/s10661-025-14666-3.
M. I. Barbosa, G. Silva, P. Ribeiro, E. Vieira, A. Perrotta, P. Moreira, and P. M. Rodrigues, “Unraveling the microbiome–environmental change nexus to contribute to a more sustainable world: A comprehensive review of artificial intelligence approaches,” Sustainability, vol. 17, no. 16, Art. no. 7209, 2025, doi: 10.3390/su17167209.
N. Kuppan, M. Padman, M. Mahadeva, S. Srinivasan, and R. Devarajan, “A comprehensive review of sustainable bioremediation techniques: Eco-friendly solutions for waste and pollution management,” Waste Management Bulletin, vol. 2, no. 3, pp. 154–171, 2024, doi: 10.1016/j.wmb.2024.07.005.
Z. A. A. Muhsin, “A systematic review of bioremediation of soil pollution,” World Journal of Pollution Studies, 2024.
P. Novielli, M. Magarelli, D. Romano, L. De Trizio, P. Di Bitonto, A. Monaco, and S. Tangaro, “Climate change and soil health: Explainable artificial intelligence reveals microbiome response to warming,” Machine Learning and Knowledge Extraction, vol. 6, no. 3, pp. 1564–1578, 2024, doi: 10.3390/make6030075.
P. Novielli, M. Magarelli, D. Romano, P. Di Bitonto, A. M. Stellacci, A. Monaco, N. Amoroso, R. Bellotti, and S. Tangaro, “Leveraging explainable AI to predict soil respiration sensitivity and its drivers for climate change mitigation,” Scientific Reports, vol. 15, no. 1, Art. no. 12527, 2025, doi: 10.1038/s41598-025-96216-y.
R. Pace, M. M. Monti, S. Cuomo, A. Affinito, and M. Ruocco, “Machine learning approaches to assess soil microbiome dynamics and bio-sustainability,” Physiologia Plantarum, vol. 178, no. 1, Art. no. e70719, 2026, doi: 10.1111/ppl.70719.
R. Pace, V. Schiano Di Cola, M. M. Monti, S. Cuomo, A. Affinito, F. Loreto, and M. Ruocco, “Artificial intelligence in soil microbiome analysis: A potential application in predicting and enhancing soil health—A review,” Discover Applied Sciences, vol. 7, Art. no. 85, 2025, doi: 10.1007/s42452-024-06381-0.
D. Pegu, S. Sarkar, A. Kumar, and V. Teronpi, “Sustainable bioremediation through microbial community design and smart ecological monitoring,” Annals of Microbiology, vol. 76, no. 3, Art. no. 3, 2025, doi: 10.1186/s13213-025-01831-9.
L. Saha, J. Tiwari, K. Bauddh, and Y. Ma, “Recent developments in microbe–plant-based bioremediation for tackling heavy metal-polluted soils,” Frontiers in Microbiology, vol. 12, Art. no. 731723, 2021, doi: 10.3389/fmicb.2021.731723.
K. R. Siddique, D. Bose, R. Bhattacharya, R. Villamarin Rodriguez, and A. Ray, “Artificial intelligence driven bioinformatics for sustainable bioremediation: Integrating computational intelligence with ecological restoration,” Environmental Science: Advances, vol. 4, pp. 1987–1997, 2025, doi: 10.1039/D5VA00240K.
A. A. B. Allen-Adebayo and K. O. Olateru, “AI-driven optimization of bioremediation strategies for river pollution: A comprehensive review and future directions,” Frontiers in Microbiology, vol. 16, Art. no. 1504254, 2025, doi: 10.3389/fmicb.2025.1504254.
X.-W. Wang, T. Wang, and Y.-Y. Liu, “Artificial Intelligence for Microbiology and Microbiome Research,” arXiv preprint arXiv:2411.01098, 2024.
B. Yan, Y. Nam, L. Li, R. A. Deek, H. Li, and S. Ma, “Recent advances in deep learning and language models for studying the microbiome,” arXiv preprint arXiv:2409.10579, 2024.
A. A. Akintola, “AI-driven monitoring systems for bioremediation: Real-time data analysis and predictive modelling,” World Journal of Advanced Research and Reviews, vol. 24, no. 1, pp. 788–803, 2024, doi: 10.30574/wjarr.2024.24.1.3099.
Downloads
Published
How to Cite
Issue
Section
License
Copyright (c) 2026 Central Asian Journal of Medical and Natural Science

This work is licensed under a Creative Commons Attribution 4.0 International License.